IL_6SPF_133

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GUAGAGGG*CCUGGAC

Length

15 nucleotides

Bulged bases

6SPF|1|a|A|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|G|655
6SPF|1|a|U|656
6SPF|1|a|A|657
6SPF|1|a|G|658
6SPF|1|a|A|659
6SPF|1|a|G|660
6SPF|1|a|G|661
6SPF|1|a|G|662
*
6SPF|1|a|C|732
6SPF|1|a|C|733
6SPF|1|a|U|734
6SPF|1|a|G|735
6SPF|1|a|G|736
6SPF|1|a|A|737
6SPF|1|a|C|738

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21