IL_6SPF_134

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGAAUUUC*GAAGGAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|G|667
6SPF|1|a|G|668
6SPF|1|a|A|669
6SPF|1|a|A|670
6SPF|1|a|U|671
6SPF|1|a|U|672
6SPF|1|a|U|673
6SPF|1|a|C|674
*
6SPF|1|a|G|704
6SPF|1|a|A|705
6SPF|1|a|A|706
6SPF|1|a|G|707
6SPF|1|a|G|708
6SPF|1|a|A|709
6SPF|1|a|A|710
6SPF|1|a|C|711

Current chains

Chain a

16S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain f

30S ribosomal protein S6

Chain k

30S ribosomal protein S11

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21