IL_6SPF_140

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CCGCA*UUCCCGG

Length

12 nucleotides

Bulged bases

6SPF|1|a|C|928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|C|925
6SPF|1|a|C|926
6SPF|1|a|G|927
6SPF|1|a|C|928
6SPF|1|a|A|929
*
6SPF|1|a|U|1374
6SPF|1|a|U|1375
6SPF|1|a|C|1376
6SPF|1|a|C|1377
6SPF|1|a|C|1378
6SPF|1|a|G|1379
6SPF|1|a|G|1380

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9