IL_6SPF_142

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_142 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.3241

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6SPF|1|a|G|1044
6SPF|1|a|C|1045
*
6SPF|1|a|G|1200
6SPF|1|a|G|1201
6SPF|1|a|C|1202

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3