Loop IL_6SPF

3D structure

PDB id: 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
Description: Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.89 Å

Loop

Sequence: CAAUGG*CGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGUCG
Length: 48 nucleotides
Bulged bases: 6SPF|1|a|C|1296, 6SPF|1|a|A|1300, 6SPF|1|a|G|1303, 6SPF|1|a|U|1307, 6SPF|1|a|C|1308, 6SPF|1|a|U|1309, 6SPF|1|a|G|1310, 6SPF|1|a|C|1311, 6SPF|1|a|A|1312, 6SPF|1|a|A|1313, 6SPF|1|a|C|1314, 6SPF|1|a|U|1315, 6SPF|1|a|C|1316, 6SPF|1|a|G|1317, 6SPF|1|a|G|1321, 6SPF|1|a|G|1323
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6SPF|1|a|C|1231
6SPF|1|a|A|1232
6SPF|1|a|A|1233
6SPF|1|a|U|1234
6SPF|1|a|G|1235
6SPF|1|a|G|1236
*
6SPF|1|a|C|1290
6SPF|1|a|G|1291
6SPF|1|a|U|1292
6SPF|1|a|A|1293
6SPF|1|a|G|1294
6SPF|1|a|U|1295
6SPF|1|a|C|1296
6SPF|1|a|C|1297
6SPF|1|a|G|1298
6SPF|1|a|G|1299
6SPF|1|a|A|1300
6SPF|1|a|U|1301
6SPF|1|a|C|1302
6SPF|1|a|G|1303
6SPF|1|a|C|1304
6SPF|1|a|A|1305
6SPF|1|a|G|1306
6SPF|1|a|U|1307
6SPF|1|a|C|1308
6SPF|1|a|U|1309
6SPF|1|a|G|1310
6SPF|1|a|C|1311
6SPF|1|a|A|1312
6SPF|1|a|A|1313
6SPF|1|a|C|1314
6SPF|1|a|U|1315
6SPF|1|a|C|1316
6SPF|1|a|G|1317
6SPF|1|a|A|1318
6SPF|1|a|C|1319
6SPF|1|a|U|1320
6SPF|1|a|G|1321
6SPF|1|a|C|1322
6SPF|1|a|G|1323
6SPF|1|a|U|1324
6SPF|1|a|G|1325
6SPF|1|a|A|1326
6SPF|1|a|A|1327
6SPF|1|a|G|1328
6SPF|1|a|U|1329
6SPF|1|a|C|1330
6SPF|1|a|G|1331

Current chains

Chain a: 16S rRNA

Nearby chains

Chain F: 50S ribosomal protein L5
Chain g: 30S ribosomal protein S7
Chain m: 30S ribosomal protein S13
Chain n: 30S ribosomal protein S14
Chain s: 30S ribosomal protein S19

IL_6SPF_143