IL_6SPF_160

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GCCUGCUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCGUGGA*UUCGCGUGGAGCCAUCCUUGAAAUACCACCCUGGCAUGC

Length

80 nucleotides

Bulged bases

6SPF|1|A|U|2095, 6SPF|1|A|U|2098, 6SPF|1|A|G|2099, 6SPF|1|A|U|2100, 6SPF|1|A|U|2105, 6SPF|1|A|C|2116, 6SPF|1|A|U|2117, 6SPF|1|A|U|2118, 6SPF|1|A|U|2142, 6SPF|1|A|C|2148, 6SPF|1|A|C|2151, 6SPF|1|A|A|2156

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|G|2089
6SPF|1|A|C|2090
6SPF|1|A|C|2091
6SPF|1|A|U|2092
6SPF|1|A|G|2093
6SPF|1|A|C|2094
6SPF|1|A|U|2095
6SPF|1|A|U|2096
6SPF|1|A|G|2097
6SPF|1|A|U|2098
6SPF|1|A|G|2099
6SPF|1|A|U|2100
6SPF|1|A|A|2101
6SPF|1|A|G|2102
6SPF|1|A|G|2103
6SPF|1|A|A|2104
6SPF|1|A|U|2105
6SPF|1|A|A|2106
6SPF|1|A|G|2107
6SPF|1|A|G|2108
6SPF|1|A|U|2109
6SPF|1|A|G|2110
6SPF|1|A|G|2111
6SPF|1|A|G|2112
6SPF|1|A|A|2113
6SPF|1|A|G|2114
6SPF|1|A|G|2115
6SPF|1|A|C|2116
6SPF|1|A|U|2117
6SPF|1|A|U|2118
6SPF|1|A|U|2119
6SPF|1|A|G|2120
6SPF|1|A|A|2121
6SPF|1|A|A|2122
6SPF|1|A|G|2123
6SPF|1|A|C|2124
6SPF|1|A|G|2125
6SPF|1|A|U|2126
6SPF|1|A|G|2127
6SPF|1|A|G|2128
6SPF|1|A|A|2129
*
6SPF|1|A|U|2136
6SPF|1|A|U|2137
6SPF|1|A|C|2138
6SPF|1|A|G|2139
6SPF|1|A|C|2140
6SPF|1|A|G|2141
6SPF|1|A|U|2142
6SPF|1|A|G|2143
6SPF|1|A|G|2144
6SPF|1|A|A|2145
6SPF|1|A|G|2146
6SPF|1|A|C|2147
6SPF|1|A|C|2148
6SPF|1|A|A|2149
6SPF|1|A|U|2150
6SPF|1|A|C|2151
6SPF|1|A|C|2152
6SPF|1|A|U|2153
6SPF|1|A|U|2154
6SPF|1|A|G|2155
6SPF|1|A|A|2156
6SPF|1|A|A|2157
6SPF|1|A|A|2158
6SPF|1|A|U|2159
6SPF|1|A|A|2160
6SPF|1|A|C|2161
6SPF|1|A|C|2162
6SPF|1|A|A|2163
6SPF|1|A|C|2164
6SPF|1|A|C|2165
6SPF|1|A|C|2166
6SPF|1|A|U|2167
6SPF|1|A|G|2168
6SPF|1|A|G|2169
6SPF|1|A|C|2170
6SPF|1|A|A|2171
6SPF|1|A|U|2172
6SPF|1|A|G|2173
6SPF|1|A|C|2174

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9