IL_6SPF_162

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUCAGACCGGUCGGAAAUCGGUCGCAGAG*CAAAAG

Length

35 nucleotides

Bulged bases

6SPF|1|A|C|2289, 6SPF|1|A|G|2290, 6SPF|1|A|U|2292, 6SPF|1|A|C|2293, 6SPF|1|A|G|2294, 6SPF|1|A|A|2298, 6SPF|1|A|U|2299, 6SPF|1|A|C|2306, 6SPF|1|A|A|2321, 6SPF|1|A|A|2323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|C|2282
6SPF|1|A|U|2283
6SPF|1|A|C|2284
6SPF|1|A|A|2285
6SPF|1|A|G|2286
6SPF|1|A|A|2287
6SPF|1|A|C|2288
6SPF|1|A|C|2289
6SPF|1|A|G|2290
6SPF|1|A|G|2291
6SPF|1|A|U|2292
6SPF|1|A|C|2293
6SPF|1|A|G|2294
6SPF|1|A|G|2295
6SPF|1|A|A|2296
6SPF|1|A|A|2297
6SPF|1|A|A|2298
6SPF|1|A|U|2299
6SPF|1|A|C|2300
6SPF|1|A|G|2301
6SPF|1|A|G|2302
6SPF|1|A|U|2303
6SPF|1|A|C|2304
6SPF|1|A|G|2305
6SPF|1|A|C|2306
6SPF|1|A|A|2307
6SPF|1|A|G|2308
6SPF|1|A|A|2309
6SPF|1|A|G|2310
*
6SPF|1|A|C|2319
6SPF|1|A|A|2320
6SPF|1|A|A|2321
6SPF|1|A|A|2322
6SPF|1|A|A|2323
6SPF|1|A|G|2324

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27