IL_6SPF_175

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

6SPF|1|a|G|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPF_175 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.2808

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22002.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SPF|1|a|U|243
6SPF|1|a|A|244
6SPF|1|a|G|245
6SPF|1|a|U|246
*
6SPF|1|a|A|268
6SPF|1|a|G|269

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17