IL_6SPG_053

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6SPG|1|A|U|1407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_053 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1455

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6SPG|1|A|C|1404
6SPG|1|A|G|1405
6SPG|1|A|A|1406
6SPG|1|A|U|1407
6SPG|1|A|G|1408
*
6SPG|1|A|C|1567
6SPG|1|A|U|1568
6SPG|1|A|A|1569
6SPG|1|A|A|1570
6SPG|1|A|G|1571

Current chains

Chain A

23S ribosomal RNA

Nearby chains