IL_6SPG_056

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

6SPG|1|A|U|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_056 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.3275

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6SPG|1|A|U|1454
6SPG|1|A|U|1455
6SPG|1|A|A|1456
6SPG|1|A|A|1457
6SPG|1|A|G|1458
*
6SPG|1|A|U|1507
6SPG|1|A|G|1508
6SPG|1|A|A|1509
6SPG|1|A|U|1510
6SPG|1|A|G|1511
6SPG|1|A|A|1512

Current chains

Chain A

23S ribosomal RNA

Nearby chains