IL_6SPG_131

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6SPG|1|a|U|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_131 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1379

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6SPG|1|a|G|440
6SPG|1|a|G|441
6SPG|1|a|A|442
6SPG|1|a|G|443
6SPG|1|a|G|444
*
6SPG|1|a|C|477
6SPG|1|a|G|478
6SPG|1|a|U|479
6SPG|1|a|U|480
6SPG|1|a|A|481
6SPG|1|a|C|482

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16