IL_6SPG_150

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UGG*CACA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPG_150 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.3806

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SPG|1|a|U|946
6SPG|1|a|G|947
6SPG|1|a|G|948
*
6SPG|1|a|C|1220
6SPG|1|a|A|1221
6SPG|1|a|C|1222
6SPG|1|a|A|1223

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19