IL_6SPG_183

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUUGUGUAGGAUAGGUGGGAGG*CCAUCCUUGAAAUACCACCCUGG

Length

45 nucleotides

Bulged bases

6SPG|1|A|U|2095, 6SPG|1|A|U|2098, 6SPG|1|A|G|2099, 6SPG|1|A|U|2100, 6SPG|1|A|U|2105, 6SPG|1|A|C|2148, 6SPG|1|A|C|2151, 6SPG|1|A|A|2156, 6SPG|1|A|U|2159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|C|2094
6SPG|1|A|U|2095
6SPG|1|A|U|2096
6SPG|1|A|G|2097
6SPG|1|A|U|2098
6SPG|1|A|G|2099
6SPG|1|A|U|2100
6SPG|1|A|A|2101
6SPG|1|A|G|2102
6SPG|1|A|G|2103
6SPG|1|A|A|2104
6SPG|1|A|U|2105
6SPG|1|A|A|2106
6SPG|1|A|G|2107
6SPG|1|A|G|2108
6SPG|1|A|U|2109
6SPG|1|A|G|2110
6SPG|1|A|G|2111
6SPG|1|A|G|2112
6SPG|1|A|A|2113
6SPG|1|A|G|2114
6SPG|1|A|G|2115
*
6SPG|1|A|C|2147
6SPG|1|A|C|2148
6SPG|1|A|A|2149
6SPG|1|A|U|2150
6SPG|1|A|C|2151
6SPG|1|A|C|2152
6SPG|1|A|U|2153
6SPG|1|A|U|2154
6SPG|1|A|G|2155
6SPG|1|A|A|2156
6SPG|1|A|A|2157
6SPG|1|A|A|2158
6SPG|1|A|U|2159
6SPG|1|A|A|2160
6SPG|1|A|C|2161
6SPG|1|A|C|2162
6SPG|1|A|A|2163
6SPG|1|A|C|2164
6SPG|1|A|C|2165
6SPG|1|A|C|2166
6SPG|1|A|U|2167
6SPG|1|A|G|2168
6SPG|1|A|G|2169

Current chains

Chain A

23S ribosomal RNA

Nearby chains