IL_6SV4_013

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_013 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.1822

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6SV4|1|2|C|186
6SV4|1|2|G|187
6SV4|1|2|A|188
6SV4|1|2|C|189
*
6SV4|1|2|G|196
6SV4|1|2|A|197
6SV4|1|2|A|198
6SV4|1|2|G|199

Current chains

Chain 2

18S rRNA

Nearby chains

Chain V

40S ribosomal protein S8-A