IL_6SV4_023

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_023 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2346

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6SV4|1|2|C|411
6SV4|1|2|A|412
6SV4|1|2|U|413
*
6SV4|1|2|A|420
6SV4|1|2|A|421
6SV4|1|2|G|422

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain T

40S ribosomal protein S6-A