IL_6SV4_047

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6SV4|1|2|G|913

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2615

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6SV4|1|2|U|893
6SV4|1|2|U|894
6SV4|1|2|G|895
6SV4|1|2|U|896
6SV4|1|2|C|897
6SV4|1|2|A|898
6SV4|1|2|G|899
*
6SV4|1|2|C|910
6SV4|1|2|U|911
6SV4|1|2|U|912
6SV4|1|2|G|913
6SV4|1|2|G|914
6SV4|1|2|A|915
6SV4|1|2|U|916
6SV4|1|2|U|917
6SV4|1|2|U|918
6SV4|1|2|A|919

Current chains

Chain 2

18S rRNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A