IL_6SV4_079

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCUA*UAAAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2|C|1644
6SV4|1|2|G|1645
6SV4|1|2|C|1646
6SV4|1|2|U|1647
6SV4|1|2|A|1648
*
6SV4|1|2|U|1752
6SV4|1|2|A|1753
6SV4|1|2|A|1754
6SV4|1|2|A|1755
6SV4|1|2|A|1756
6SV4|1|2|G|1757

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AS

60S ribosomal protein L41-B

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain c

40S ribosomal protein S23-A

Chain g

40S ribosomal protein S30-A