IL_6SV4_097

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_097 not in the Motif Atlas

Geometric match to IL_4V88_393

Geometric discrepancy: 0.1358

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6SV4|1|2b|U|117
6SV4|1|2b|U|118
6SV4|1|2b|A|119
6SV4|1|2b|U|120
6SV4|1|2b|U|121
6SV4|1|2b|U|122
*
6SV4|1|2b|A|295
6SV4|1|2b|U|296
6SV4|1|2b|U|297
6SV4|1|2b|C|298
6SV4|1|2b|A|299

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Vb

40S ribosomal protein S8-A