IL_6SV4_101

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6SV4|1|2b|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_101 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.1994

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6SV4|1|2b|G|204
6SV4|1|2b|U|205
6SV4|1|2b|A|206
*
6SV4|1|2b|U|259
6SV4|1|2b|U|260
6SV4|1|2b|U|261
6SV4|1|2b|U|262
6SV4|1|2b|C|263

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Vb

40S ribosomal protein S8-A