IL_6SV4_105

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6SV4|1|2b|U|280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_105 not in the Motif Atlas

Geometric match to IL_4V88_401

Geometric discrepancy: 0.3453

The information below is about IL_4V88_401

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SV4|1|2b|C|275
6SV4|1|2b|C|276
*
6SV4|1|2b|G|279
6SV4|1|2b|U|280
6SV4|1|2b|G|281

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Tb

40S ribosomal protein S6-A

Chain XE

60S ribosomal protein L24-A