IL_6SV4_107

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_107 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2595

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45649.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|2b|U|318
6SV4|1|2b|U|319
6SV4|1|2b|U|320
6SV4|1|2b|C|321
6SV4|1|2b|G|322
6SV4|1|2b|A|323
*
6SV4|1|2b|U|345
6SV4|1|2b|G|346

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A

Chain Xb

40S ribosomal protein S11-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA