IL_6SV4_112

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_112 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.2027

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

6SV4|1|2b|C|443
6SV4|1|2b|C|444
6SV4|1|2b|A|445
6SV4|1|2b|A|446
6SV4|1|2b|U|447
*
6SV4|1|2b|A|460
6SV4|1|2b|G|461

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Wb

40S ribosomal protein S9-A

Chain db

40S ribosomal protein S24-A