IL_6SV4_114

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUA*UAAUU

Length

9 nucleotides

Bulged bases

6SV4|1|2b|A|506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2b|G|480
6SV4|1|2b|A|481
6SV4|1|2b|U|482
6SV4|1|2b|A|483
*
6SV4|1|2b|U|504
6SV4|1|2b|A|505
6SV4|1|2b|A|506
6SV4|1|2b|U|507
6SV4|1|2b|U|508

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Wb

40S ribosomal protein S9-A

Chain gb

40S ribosomal protein S30-A