IL_6SV4_125
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUG*CAUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_125 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2209
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6SV4|1|2b|U|748
6SV4|1|2b|U|749
6SV4|1|2b|U|750
6SV4|1|2b|G|751
*
6SV4|1|2b|C|798
6SV4|1|2b|A|799
6SV4|1|2b|U|800
6SV4|1|2b|G|801
Current chains
- Chain 2b
- 18S rRNA
Nearby chains
- Chain Sb
- 40S ribosomal protein S4-A
- Chain Ub
- 40S ribosomal protein S7-A
- Chain Xb
- 40S ribosomal protein S11-A
- Chain bb
- 40S ribosomal protein S22-A
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