IL_6SV4_129

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

6SV4|1|2b|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_129 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.1475

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6SV4|1|2b|G|867
6SV4|1|2b|G|868
6SV4|1|2b|A|869
6SV4|1|2b|C|870
*
6SV4|1|2b|G|957
6SV4|1|2b|U|958
6SV4|1|2b|U|959
6SV4|1|2b|U|960
6SV4|1|2b|U|961

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Yb

40S ribosomal protein S13

Chain fb

40S ribosomal protein S27-A