IL_6SV4_138

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6SV4|1|2b|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_138 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.2395

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

6SV4|1|2b|G|1051
6SV4|1|2b|U|1052
6SV4|1|2b|G|1053
*
6SV4|1|2b|C|1066
6SV4|1|2b|C|1067

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Gb

40S ribosomal protein S17-B

Chain Qb

40S ribosomal protein S1-A

Chain fb

40S ribosomal protein S27-A