IL_6SV4_143

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_143 not in the Motif Atlas

Geometric match to IL_4V88_444

Geometric discrepancy: 0.1869

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|2b|C|1173
6SV4|1|2b|C|1174
6SV4|1|2b|U|1175
*
6SV4|1|2b|G|1464
6SV4|1|2b|C|1465
6SV4|1|2b|G|1466

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Fb

40S ribosomal protein S16-A

Chain Hb

40S ribosomal protein S18-A

Chain Ib

40S ribosomal protein S19-A

Chain Jb

40S ribosomal protein S20

Chain mb

Transfer RNA; tRNA