IL_6SV4_171

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_171 not in the Motif Atlas

Geometric match to IL_4V88_467

Geometric discrepancy: 0.1681

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|2b|G|1672
6SV4|1|2b|G|1673
6SV4|1|2b|C|1674
*
6SV4|1|2b|G|1727
6SV4|1|2b|A|1728
6SV4|1|2b|C|1729

Current chains

Chain 2b

18S rRNA

Nearby chains

Chain Tb

40S ribosomal protein S6-A

Chain Vb

40S ribosomal protein S8-A

Chain XE

60S ribosomal protein L24-A