IL_6SV4_193

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUUCGA*UGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|2c|C|317
6SV4|1|2c|U|318
6SV4|1|2c|U|319
6SV4|1|2c|U|320
6SV4|1|2c|C|321
6SV4|1|2c|G|322
6SV4|1|2c|A|323
*
6SV4|1|2c|U|345
6SV4|1|2c|G|346
6SV4|1|2c|G|347

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Vc

40S ribosomal protein S8-A

Chain Xc

40S ribosomal protein S11-A

Chain ZQ

Large subunit ribosomal RNA; LSU rRNA