IL_6SV4_197

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6SV4|1|2c|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_197 not in the Motif Atlas

Geometric match to IL_5J7L_017

Geometric discrepancy: 0.2981

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6SV4|1|2c|U|439
6SV4|1|2c|U|440
6SV4|1|2c|A|441
*
6SV4|1|2c|U|463
6SV4|1|2c|A|464

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Wc

40S ribosomal protein S9-A

Chain dc

40S ribosomal protein S24-A