IL_6SV4_201

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_201 not in the Motif Atlas

Geometric match to IL_5J7L_004

Geometric discrepancy: 0.1614

The information below is about IL_5J7L_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6SV4|1|2c|U|517
6SV4|1|2c|A|518
*
6SV4|1|2c|U|533
6SV4|1|2c|A|534
6SV4|1|2c|A|535

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Wc

40S ribosomal protein S9-A

Chain dc

40S ribosomal protein S24-A