IL_6SV4_204

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6SV4|1|2c|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_204 not in the Motif Atlas

Geometric match to IL_4V88_414

Geometric discrepancy: 0.1407

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SV4|1|2c|G|557
6SV4|1|2c|U|558
6SV4|1|2c|C|559
*
6SV4|1|2c|G|586
6SV4|1|2c|C|587

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Ac

40S ribosomal protein S3

Chain cc

40S ribosomal protein S23-A

Chain gc

40S ribosomal protein S30-A