IL_6SV4_208

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_208 not in the Motif Atlas

Homologous match to IL_4V88_419

Geometric discrepancy: 0.48

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|2c|C|646
6SV4|1|2c|G|647
6SV4|1|2c|G|648
*
6SV4|1|2c|C|686
6SV4|1|2c|G|687
6SV4|1|2c|G|688

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Uc

40S ribosomal protein S7-A

Chain bc

40S ribosomal protein S22-A