IL_6SV4_215

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_215 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.305

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6SV4|1|2c|G|866
6SV4|1|2c|G|867
6SV4|1|2c|G|868
*
6SV4|1|2c|U|960
6SV4|1|2c|U|961
6SV4|1|2c|C|962

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Yc

40S ribosomal protein S13

Chain bc

40S ribosomal protein S22-A

Chain fc

40S ribosomal protein S27-A