IL_6SV4_216

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6SV4|1|2c|U|959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_216 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3787

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6SV4|1|2c|G|868
6SV4|1|2c|A|869
6SV4|1|2c|C|870
*
6SV4|1|2c|G|957
6SV4|1|2c|U|958
6SV4|1|2c|U|959
6SV4|1|2c|U|960

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Yc

40S ribosomal protein S13

Chain bc

40S ribosomal protein S22-A

Chain fc

40S ribosomal protein S27-A