IL_6SV4_228
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_228 not in the Motif Atlas
- Homologous match to IL_4V88_444
- Geometric discrepancy: 0.1147
- The information below is about IL_4V88_444
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6SV4|1|2c|C|1173
6SV4|1|2c|C|1174
6SV4|1|2c|U|1175
*
6SV4|1|2c|G|1464
6SV4|1|2c|C|1465
6SV4|1|2c|G|1466
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Fc
- 40S ribosomal protein S16-A
- Chain Hc
- 40S ribosomal protein S18-A
- Chain Ic
- 40S ribosomal protein S19-A
- Chain Jc
- 40S ribosomal protein S20
- Chain mc
- Transfer RNA; tRNA
Coloring options: