IL_6SV4_233

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6SV4|1|2c|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_233 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.2376

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SV4|1|2c|G|1268
6SV4|1|2c|U|1269
6SV4|1|2c|G|1270
*
6SV4|1|2c|C|1440
6SV4|1|2c|C|1441

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Cc

40S ribosomal protein S10-A

Chain Mc

40S ribosomal protein S29-A

Chain Nc

Ubiquitin-40S ribosomal protein S31