IL_6SV4_238

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_238 not in the Motif Atlas

Geometric match to IL_4V88_454

Geometric discrepancy: 0.2965

The information below is about IL_4V88_454

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6SV4|1|2c|C|1306
6SV4|1|2c|U|1307
6SV4|1|2c|G|1308
*
6SV4|1|2c|C|1317
6SV4|1|2c|G|1318

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Gc

40S ribosomal protein S17-B

Chain Pc

40S ribosomal protein S0-A

Chain ec

40S ribosomal protein S26-A