IL_6SV4_246

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_246 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.2089

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SV4|1|2c|G|1540
6SV4|1|2c|G|1541
6SV4|1|2c|G|1542
6SV4|1|2c|A|1543
6SV4|1|2c|U|1544
6SV4|1|2c|A|1545
*
6SV4|1|2c|U|1566
6SV4|1|2c|U|1567
6SV4|1|2c|C|1568
6SV4|1|2c|A|1569
6SV4|1|2c|A|1570
6SV4|1|2c|C|1571

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Hc

40S ribosomal protein S18-A

Chain Ic

40S ribosomal protein S19-A