IL_6SV4_253

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_253 not in the Motif Atlas

Homologous match to IL_4V88_470

Geometric discrepancy: 0.1566

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6SV4|1|2c|U|1665
6SV4|1|2c|U|1666
6SV4|1|2c|A|1667
*
6SV4|1|2c|U|1734
6SV4|1|2c|U|1735
6SV4|1|2c|G|1736

Current chains

Chain 2c

18S rRNA

Nearby chains

Chain Vc

40S ribosomal protein S8-A

Chain ZQ

Large subunit ribosomal RNA; LSU rRNA

Chain zB

60S ribosomal protein L23-A