IL_6SV4_254
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_254 not in the Motif Atlas
- Geometric match to IL_1SAQ_002
- Geometric discrepancy: 0.1389
- The information below is about IL_1SAQ_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6SV4|1|2c|U|1669
6SV4|1|2c|G|1670
6SV4|1|2c|A|1671
6SV4|1|2c|G|1672
*
6SV4|1|2c|C|1729
6SV4|1|2c|A|1730
6SV4|1|2c|A|1731
6SV4|1|2c|A|1732
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Tc
- 40S ribosomal protein S6-A
- Chain Vc
- 40S ribosomal protein S8-A
- Chain zB
- 60S ribosomal protein L23-A
- Chain zE
- 60S ribosomal protein L24-A
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