IL_6SV4_263

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6SV4|1|BQ|U|147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_263 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.184

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6SV4|1|BQ|A|123
6SV4|1|BQ|U|124
*
6SV4|1|BQ|A|144
6SV4|1|BQ|G|145
6SV4|1|BQ|U|146
6SV4|1|BQ|U|147
6SV4|1|BQ|G|148
6SV4|1|BQ|U|149

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AQ

60S ribosomal protein L15-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA