IL_6SV4_267

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

6SV4|1|BQ|U|240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_267 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.3936

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6SV4|1|BQ|U|177
6SV4|1|BQ|U|178
*
6SV4|1|BQ|A|238
6SV4|1|BQ|G|239
6SV4|1|BQ|U|240
6SV4|1|BQ|G|241

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AJ

60S ribosomal protein L13-A

Chain BP

60S ribosomal protein L35-A