IL_6SV4_275
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6SV4|1|BQ|A|519, 6SV4|1|BQ|U|520
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_275 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1278
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|BQ|G|517
6SV4|1|BQ|G|518
6SV4|1|BQ|A|519
6SV4|1|BQ|U|520
6SV4|1|BQ|A|521
6SV4|1|BQ|A|522
6SV4|1|BQ|A|523
6SV4|1|BQ|U|524
6SV4|1|BQ|C|525
*
6SV4|1|BQ|G|567
6SV4|1|BQ|G|568
6SV4|1|BQ|A|569
6SV4|1|BQ|A|570
6SV4|1|BQ|U|571
6SV4|1|BQ|A|572
6SV4|1|BQ|C|573
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L14-A
- Chain BE
- 60S ribosomal protein L4-A
- Chain BH
- 60S ribosomal protein L20-A
- Chain BO
- 60S ribosomal protein L7-A
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