IL_6SV4_286

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6SV4|1|BQ|G|860

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_286 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.1612

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6SV4|1|BQ|G|833
6SV4|1|BQ|U|834
*
6SV4|1|BQ|G|859
6SV4|1|BQ|G|860
6SV4|1|BQ|C|861

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AT

60S ribosomal protein L43-A

Chain AW

60S ribosomal protein L2-A

Chain BF

60S ribosomal protein L19-A