IL_6SV4_287
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SV4_287 not in the Motif Atlas
- Geometric match to IL_4V9F_027
- Geometric discrepancy: 0.1211
- The information below is about IL_4V9F_027
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
6SV4|1|BQ|U|834
6SV4|1|BQ|G|835
6SV4|1|BQ|A|836
6SV4|1|BQ|A|837
6SV4|1|BQ|G|838
*
6SV4|1|BQ|U|855
6SV4|1|BQ|G|856
6SV4|1|BQ|G|857
6SV4|1|BQ|A|858
6SV4|1|BQ|G|859
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain BF
- 60S ribosomal protein L19-A
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