IL_6SV4_300

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCCG*UGACC

Length

12 nucleotides

Bulged bases

6SV4|1|BQ|U|1015, 6SV4|1|BQ|C|1016, 6SV4|1|BQ|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SV4|1|BQ|G|1012
6SV4|1|BQ|G|1013
6SV4|1|BQ|U|1014
6SV4|1|BQ|U|1015
6SV4|1|BQ|C|1016
6SV4|1|BQ|C|1017
6SV4|1|BQ|G|1018
*
6SV4|1|BQ|U|1034
6SV4|1|BQ|G|1035
6SV4|1|BQ|A|1036
6SV4|1|BQ|C|1037
6SV4|1|BQ|C|1038

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5