IL_6SV4_311

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6SV4|1|BQ|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_311 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4627

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6SV4|1|BQ|G|1234
6SV4|1|BQ|U|1235
6SV4|1|BQ|G|1236
6SV4|1|BQ|G|1237
6SV4|1|BQ|C|1238
*
6SV4|1|BQ|G|1250
6SV4|1|BQ|A|1251
6SV4|1|BQ|A|1252
6SV4|1|BQ|U|1253
6SV4|1|BQ|C|1254

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BU

60S acidic ribosomal protein P0