IL_6SV4_312

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6SV4|1|BQ|A|1263

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_312 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3096

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6SV4|1|BQ|G|1262
6SV4|1|BQ|A|1263
6SV4|1|BQ|G|1264
6SV4|1|BQ|U|1265
6SV4|1|BQ|G|1266
*
6SV4|1|BQ|C|1275
6SV4|1|BQ|U|1276
6SV4|1|BQ|C|1277

Current chains

Chain BQ

25S rRNA

Nearby chains