IL_6SV4_321

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SV4_321 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2654

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6SV4|1|BQ|G|1561
6SV4|1|BQ|C|1562
*
6SV4|1|BQ|G|1577
6SV4|1|BQ|C|1578
6SV4|1|BQ|C|1579

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AW

60S ribosomal protein L2-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA